PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G07450.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 178aa    MW: 20338.2 Da    PI: 9.3223
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G07450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.51e-151460148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEde l + v+ +G   W+ Ia+ ++   t+kqc++rw ++l
  ORUFI07G07450.1 14 KGGWTREEDEVLRQMVRHHGDCKWTEIAKSLP-SQTGKQCRERWTNHL 60
                     688*****************************.************996 PP

2Myb_DNA-binding25.82.5e-0867104645
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +eE+ +l+++++ +G++ W++I r +  g +++ +k++w+
  ORUFI07G07450.1  67 EEEHMKLIEVHRTYGNR-WSAIVRWLL-GWSENTVKNHWN 104
                      7****************.********9.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.803964IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-191360IPR009057Homeodomain-like
SMARTSM007171.1E-131362IPR001005SANT/Myb domain
SuperFamilySSF466891.96E-2414107IPR009057Homeodomain-like
PfamPF002499.4E-151460IPR001005SANT/Myb domain
CDDcd001671.37E-131760No hitNo description
Gene3DG3DSA:1.10.10.602.0E-867106IPR009057Homeodomain-like
CDDcd001672.08E-567104No hitNo description
SMARTSM007170.1567109IPR001005SANT/Myb domain
PROSITE profilePS500906.02867104IPR017877Myb-like domain
PfamPF002491.5E-667104IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MQAAGSNGNL GLIKGGWTRE EDEVLRQMVR HHGDCKWTEI AKSLPSQTGK QCRERWTNHL  60
YSEIKIEEEH MKLIEVHRTY GNRWSAIVRW LLGWSENTVK NHWNPTKRSL NSKQRLRKKN  120
SEKAAPGQPS HLEECICSFQ NPLLDETAPP PLAPPAPFDI VRYGTCRLIG VIPTPPAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26121125110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankDQ9896280.0DQ989628.1 Oryza sativa (indica cultivar-group) clone BAC 21O9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645903.13e-78PREDICTED: transcription factor RAX1-like
SwissprotQ9S7L21e-30MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A0E0Q5P01e-131A0A0E0Q5P0_ORYRU; Uncharacterized protein
STRINGLOC_Os07g12130.11e-77(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.19e-32myb domain protein 98